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1

A core gut microbiome in obese and lean twins

Turnbaugh, Peter J., Hamady, Micah, Yatsunenko, Tanya, Cantarel, Brandi L., Duncan, Alexis, Ley, Ruth E., Sogin, Mitchell L., Jones, William J., Roe, Bruce A., Affourtit, Jason P.

Journal:

Year:

2008

Language:

english

File:

PDF, 201 KB

english, 2008

2

Microbiome profiling in extremely acidic soils affected by hydrothermal fluids: the case of Solfatara Crater (Campi Flegrei, southern Italy)

Simona, Crognale, Stefania, Venturi, Franco, Tassi, Simona, Rossetti, Heba, Rashed, Jacopo, Cabassi, Francesco, Capecchiacci, Barbara, Nisi, Orlando, Vaselli, G, Morrison Hilary, L, Sogin Mitchell, St

Journal:

FEMS Microbiology Ecology

Year:

2018

Language:

english

File:

PDF, 1.92 MB

english, 2018

3

Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants

Madan, Juliette C., Hoen, Anne G., Lundgren, Sara N., Farzan, Shohreh F., Cottingham, Kathryn L., Morrison, Hilary G., Sogin, Mitchell L., Li, Hongzhe, Moore, Jason H., Karagas, Margaret R.

Journal:

JAMA Pediatrics

Year:

2016

Language:

english

File:

PDF, 456 KB

english, 2016

4

The Microbiome and Human Biology

Knight, Rob, Callewaert, Chris, Marotz, Clarisse, Hyde, Embriette R., Debelius, Justine W., McDonald, Daniel, Sogin, Mitchell L.

Journal:

Annual Review of Genomics and Human Genetics

Year:

2017

Language:

english

File:

PDF, 635 KB

english, 2017

5

A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: Some modifications in the sanger method for RNA sequencing

Carl Woese, Mitchell Sogin, David Stahl, Bobby Joe Lewis, Linda Bonen

Journal:

Journal of Molecular Evolution

Year:

1976

Language:

english

File:

PDF, 659 KB

english, 1976

6

A Molecular Phylogenetic Framework for the Phylum Ctenophora Using 18S rRNA Genes

Mircea Podar, Steven H.D. Haddock, Mitchell L. Sogin, G.Richard Harbison

Journal:

Molecular Phylogenetics and Evolution

Year:

2001

Language:

english

File:

PDF, 327 KB

english, 2001

7

Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda: Loliginidae)

Elena Barbieri, Bruce J. Paster, Deborah Hughes, Ludek Zurek, Duane P. Moser, Andreas Teske, Mitchell L. Sogin

Journal:

Environmental Microbiology

Year:

2001

Language:

english

File:

PDF, 1.12 MB

english, 2001

8

DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA fromPodospora anserina

Donald J. Cummings, Joanne M. Domenico, James Nelson, Mitchell L. Sogin

Journal:

Journal of Molecular Evolution

Year:

1989

Language:

english

File:

PDF, 1.06 MB

english, 1989

9

Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts

Julie A. Huber, Holly V. Cantin, Susan M. Huse, David B. Mark Welch, Mitchell L. Sogin, David A. Butterfield

Journal:

FEMS Microbiology Ecology

Year:

2010

Language:

english

File:

PDF, 1.24 MB

english, 2010

10

Phylogenetic Analysis of Complete Small Subunit Ribosomal RNA Coding Region of Myxidium lieberkuehni: Evidence that Myxozoa are Metazoa and Related to the Bilateria

Martin Schlegel, Jiří Lom, Alexandra Stechmann, Detlef Bernhard, Detlef Leipe, Iva Dyková, Mitchell L. Sogin

Journal:

Archiv für Protistenkunde

Year:

1996

Language:

english

File:

PDF, 1.64 MB

english, 1996

11

The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions

Linda Medlin, Hille J. Elwood, Shawn Stickel, Mitchell L. Sogin

Journal:

Year:

1988

Language:

english

File:

PDF, 1.01 MB

english, 1988

12

Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa

Medina, Mnica, Collins, Allen G., Taylor, John W., Valentine, James W., Lipps, Jere H., Amaral-Zettler, Linda, Sogin, Mitchell L.

Journal:

International Journal of Astrobiology

Year:

2003

Language:

english

File:

PDF, 156 KB

english, 2003

13

From Genes to Genomes: Beyond Biodiversity in Spain's Rio Tinto

Linda A. Amaral Zettler, Mark A. Messerli, Abby D. Laatsch, Peter J. S. Smith and Mitchell L. Sogin

Journal:

Biological Bulletin

Year:

2003

Language:

english

File:

PDF, 571 KB

english, 2003

14

Comparison of Bacterial Communities in Sands and Water at Beaches with Bacterial Water Quality Violations

Halliday, Elizabeth, McLellan, Sandra L., Amaral-Zettler, Linda A., Sogin, Mitchell L., Gast, Rebecca J., Zhou, Zhi

Journal:

Year:

2014

Language:

english

File:

PDF, 673 KB

english, 2014

15

Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts

Denis H. Lynn, Mitchell L. Sogin

Journal:

Year:

1988

Language:

english

File:

PDF, 511 KB

english, 1988

16

Evolutionary relationships within the fungi: Analyses of nuclear small subunit rRNA sequences

Thomas D. Bruns, Rytas Vilgalys, Susan M. Barns, Dolores Gonzalez, David S. Hibbett, David J. Lane, Luc Simon, Shawn Stickel, Timothy M. Szaro, William G. Weisburg, Mitchell L. Sogin

Journal:

Molecular Phylogenetics and Evolution

Year:

1992

Language:

english

File:

PDF, 1.32 MB

english, 1992

17

Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Devescovinidae and Calonymphidae (Trichomonadea)

Delphine Gerbod, Christophe Noël, Michael F. Dolan, Virginia P. Edgcomb, Osamu Kitade, Satoko Noda, Fabienne Dufernez, Moriya Ohkuma, Toshiaki Kudo, Monique Capron, Mitchell L. Sogin, Eric Viscogliosi

Journal:

Molecular Phylogenetics and Evolution

Year:

2002

Language:

english

File:

PDF, 371 KB

english, 2002

18

Primary structure of theParamecium tetraureliasmall-subunit rRNA coding region: Phylogenetic relationships within the caliophora

Mitchell L. Sogin, Hille J. Elwood

Journal:

Journal of Molecular Evolution

Year:

1986

Language:

english

File:

PDF, 861 KB

english, 1986

19

Molecular phylogenetic analysis of actin genic regions fromAchlya bisexualis(Oomycota) andCostaria costata(Chromophyta)

Debashish Bhattacharya, Shawn K. Stickel, Mitchell L. Sogin

Journal:

Journal of Molecular Evolution

Year:

1991

Language:

english

File:

PDF, 1.05 MB

english, 1991

20

Phylogenetic relationships within the class Oligohymenophorea, phylum Cilophora, inferred from the complete small subunit rRNA gene sequences ofColpidium campylum, Glaucoma chattoni, andOpisthonecta henneguyi

Spencer J. Greenwood, Mitchell L. Sogin, Denis H. Lynn

Journal:

Journal of Molecular Evolution

Year:

1991

Language:

english

File:

PDF, 1.17 MB

english, 1991

21

Primary Structure and Phylogenetic Relationships of a Malate Dehydrogenase Gene fromGiardia lamblia

Andrew J. Roger, Hilary G. Morrison, Mitchell L. Sogin

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 1.43 MB

english, 1999

22

Phylogenomic Analysis of the α Proteasome Gene Family from Early-Diverging Eukaryotes

Juan L. Bouzatrid="*"rid="†", Leslie K. McNeilrid="*", Hugh M. Robertson, Leellen F. Solter, Julie E. Nixon, Jonathan E. Beever, H. Rex Gaskins, Gary Olsen, Shankar Subramaniam, Mitchell L. Sogin, Har

Journal:

Journal of Molecular Evolution

Year:

2000

Language:

english

File:

PDF, 2.10 MB

english, 2000

23

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

HÉLÈNE AGOGUÉ, DOMINIQUE LAMY, PHILLIP R. NEAL, MITCHELL L. SOGIN, GERHARD J. HERNDL

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 775 KB

english, 2011

24

Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition

David T. Kysela, Carmen Palacios, Mitchell L. Sogin

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 200 KB

english, 2005

25

Molecular characterization of sulfate-reducing bacteria in a New England salt marsh

Michele Bahr, Byron C. Crump, Vanja Klepac-Ceraj, Andreas Teske, Mitchell L. Sogin, John E. Hobbie

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 319 KB

english, 2005

26

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

Julie A. Huber, Hilary G. Morrison, Susan M. Huse, Phillip R. Neal, Mitchell L. Sogin, David B. Mark Welch

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 450 KB

english, 2009

27

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Susan M. Huse, David Mark Welch, Hilary G. Morrison, Mitchell L. Sogin

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 480 KB

english, 2010

28

Ribosomal RNA Genes of Pneumocystis carinii

JEFFREY C. EDMAN, JOSEPH A. KOVACS, HENRY MASUR, DANIEL V. SANTI, HILLE J. EL WOOD, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

1989

Language:

english

File:

PDF, 301 KB

english, 1989

29

Phylogenetic Relationships of Blepharisma Americanum and Colpoda Inflata Within the Phylum Ciliophora Inferred From Complete Small Subunit Rrna Gene Sequences

SPENCER J. GREENWOOD, MARTIN SCHLEGEL, MITCHELL L. SOGIN, DENIS H.LYNN

Journal:

Journal of Eukaryotic Microbiology

Year:

1991

Language:

english

File:

PDF, 687 KB

english, 1991

30

The Evolution of the Vahlkampfiidae as Deduced from 16S-like Ribosomal RNA Analysis

GREGORY HINKLE, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

1993

Language:

english

File:

PDF, 636 KB

english, 1993

31

The Sequence of the Hartmannella vermiformis Small Subunit rRNA Coding Region

JOHN H. GUNDERSON, SUSAN J. GOSS, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

1994

Language:

english

File:

PDF, 181 KB

english, 1994

32

Phylogenetic Relationships of the Nassulida Within the Phylum Ciliophora Inferred from the Complete Small Subunit rRNA Gene Sequences of Furgasonia blochmanni, Obertrumia georgiana, and Pseudomicrothorax dubius

DETLEF BERNHARD, DETLEF D. LEIPE, MITCHELL L. SOGIN, K. MARTIN SCHLEGEL

Journal:

Journal of Eukaryotic Microbiology

Year:

1995

Language:

english

File:

PDF, 623 KB

english, 1995

33

Phylogeny of Trichomonads Inferred from Small-Subunit rRNA Sequences

JOHN GUNDERSON, GREGORY HINKLE, DETLEF LEIPE, HILARY G. MORRISON, SHAWN K. STICKEL, DAVID A. ODELSON, JOHN A. BREZNAK, THOMAS A. NERAD, MIKLOS MÜLLER, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

1995

Language:

english

File:

PDF, 536 KB

english, 1995

34

Insights into the Evolution of Nuclear Dualism in the Ciliates Revealed by Phylogenetic Analysis of rRNA Sequences

BRIGITTE HAMMERSCHMIDT, MARTIN SCHLEGEL, DENIS H. LYNN, DETLEF D. LEIPE, MITCHELL L. SOGIN, IGOR B. RAIKOV

Journal:

Journal of Eukaryotic Microbiology

Year:

1996

Language:

english

File:

PDF, 633 KB

english, 1996

35

Molecular Phytogeny of Parabasalids Based on Small Subunit rRNA Sequences, with Emphasis on the Trichomonadinae Subfamily

PILAR DELGADO-VISCOGLIOSI, ERIC VISCOGLIOSI, DELPHINE GERBOD, JAROSLAV KULDA, MITCHELL L. SOGIN, VIRGINIA P. EDGCOMB

Journal:

Journal of Eukaryotic Microbiology

Year:

2000

Language:

english

File:

PDF, 745 KB

english, 2000

36

Phylogenetic Position of the Trichomonad Parasite of Turkeys, Histomonas meleagridis (Smith) Tyzzer, Inferred from Small Subunit rRNA Sequence

DELPHINE GERBOD, VIRGINIA P. EDGCOMB, CHRISTOPHE NOËL, LIONEL ZENNER, RENÉ WINTJENS, PILAR DELGADO-VISCOGLIOSI, MICHAEL E. HOLDER, MITCHELL L. SOGIN, ERIC VISCOGLIOSI

Journal:

Journal of Eukaryotic Microbiology

Year:

2001

Language:

english

File:

PDF, 1.03 MB

english, 2001

37

The Nucleariid Amoebae: More Protists at the Animal-Fungal Boundary

LINDA A. AMARAL ZETTLER, THOMAS A. NERAD, CHARLES J. O'KELLY, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

2001

Language:

english

File:

PDF, 1.00 MB

english, 2001

38

Two New Small-Subunit Ribosomal RNA Gene Lineages within the Subclass Gymnamoebia

MICHAEL T. PEGLAR, LINDA A. AMARAL ZETTLER, O. ROGER ANDERSON, THOMAS A. NERAD, PATRICK M. GILLEVET, THOMAS E. MULLEN, SALVATORE FRASCA JR., JEFFREY D. SILBERMAN, CHARLES J. O'KELLY, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

2003

Language:

english

File:

PDF, 1.87 MB

english, 2003

39

Genetic Exchange Within and Between Assemblages of Giardia duodenalis

ERICA LASEK-NESSELQUIST, DAVID MARK WELCH, RICHARD CHRISTOPHER ANDREW THOMPSON, ROBERT F. STEUART, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

2009

Language:

english

File:

PDF, 319 KB

english, 2009

40

Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the Fungi

Edman, Jeffrey C., Kovacs, Joseph A., Masur, Henry, Santi, Daniel V., Elwood, Hille J., Sogin, Mitchell L.

Journal:

Year:

1988

File:

PDF, 652 KB

1988

41

Giants among the prokaryotes

Sogin, Mitchell L.

Journal:

Year:

1993

File:

PDF, 145 KB

1993

42

Universal tree of life

Sogin, Mitchell L., Hinkle, Gregory, Leipe, Detlef D.

Journal:

Year:

1993

File:

PDF, 148 KB

1993

43

Human parasite finds taxonomic home

Silberman, Jeffrey D., Sogin, Mitchell L., Leipe, Detlef D., Clark, C. Graham

Journal:

Year:

1996

File:

PDF, 428 KB

1996

44

Microbiology: Eukaryotic diversity in Spain's River of Fire

Amaral Zettler, Linda A., Gómez, Felipe, Zettler, Erik, Keenan, Brendan G., Amils, Ricardo, Sogin, Mitchell L.

Journal:

Year:

2002

Language:

english

File:

PDF, 96 KB

english, 2002

45

Comparative community genomics in the Dead Sea: an increasingly extreme environment

Bodaker, Idan, Sharon, Itai, Suzuki, Marcelino T, Feingersch, Roi, Shmoish, Michael, Andreishcheva, Ekaterina, Sogin, Mitchell L, Rosenberg, Mira, Maguire, Michael E, Belkin, Shimshon

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 743 KB

english, 2009

46

Microbial community composition in sediments resists perturbation by nutrient enrichment

Bowen, Jennifer L, Ward, Bess B, Morrison, Hilary G, Hobbie, John E, Valiela, Ivan, Deegan, Linda A, Sogin, Mitchell L

Journal:

The ISME Journal

Year:

2011

Language:

english

File:

PDF, 755 KB

english, 2011

47

Abundance and diversity of microbial life in ocean crust

Santelli, Cara M., Orcutt, Beth N., Banning, Erin, Bach, Wolfgang, Moyer, Craig L., Sogin, Mitchell L., Staudigel, Hubert, Edwards, Katrina J.

Journal:

Year:

2008

Language:

english

File:

PDF, 536 KB

english, 2008

48

Algae Containing Chlorophylls a + c are Paraphyletic: Molecular Evolutionary Analysis of the Chromophyta

Debashish Bhattacharya, Linda Medlin, Patricia O. Wainright, Edgardo V. Ariztia, Claude Bibeau, Shawn K. Stickel and Mitchell L. Sogin

Journal:

Year:

1992

Language:

english

File:

PDF, 2.10 MB

english, 1992

49

Global distribution and diversity of marine Verrucomicrobia

Freitas, Sara, Hatosy, Stephen, Fuhrman, Jed A, Huse, Susan M, Mark Welch, David B, Sogin, Mitchell L, Martiny, Adam C

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 703 KB

english, 2012

50

Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum

Thomas F. McCutchan, Vidal F. de la Cruz, Altaf A. Lal, John H. Gunderson, Hille J. Elwood, Mitchell L. Sogin

Journal:

Molecular and Biochemical Parasitology

Year:

1988

Language:

english

File:

PDF, 609 KB

english, 1988

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